Build 478 is released.
1. Implementing the partial labeling policy for breast tissues(9) segmentations from GRASP.
2. Implementing the custom AdamW initializer.
3. Moved HardDICE calculation logic to CPU-non-Tensor for more detailed control.
4. Implemented GUI function for V[t]-V[1] subtraction (BPE) calculation.
Build 477 is released
1. Finalized FiLM categories in the Unet. Implemented "Time as Category" approach and validated on H130 set.
2. Reimplemented inference for the above, resulting segmentation compensates the motion.
3. Restored the GRASP-4D training functionality with the same BrUnet2D network used for H130.
4. Fixed defect with 3-projection view
Build 476 is released.
1. Fixed defect in Surface point detection for wave propagation. This was also rippling into BiCal processing.
2. Implemented corner inpainting during the affine augmentation based on wavefront averaging.
3. Implemented the Augmentation mask which changes during augmentation and is used for restricting the cost calculation.
4. implemented FiLM mechanism: categories incorporated into U-net learning. Implemented "Times as Category".
5. Implemented the new model and integrated under "BRUNET_H130" model menu
Build 475 is released.
1. Adapted MirrorX and MirrorY functions for multi-channel augmentation.
2. Fixed a substantial defect in VA_IsInSliceProj. It was causing a crash under certain scroll parameters.
3. Fixed defect in GetResolution function.
4. Breast Unet: implemented Tversky cost.
5. Corrected 3D Separable convolution defect affecting the N3.
Build 474 is released.
1. Corrected a defect in DlgVolInfo: the Rows\Columns\Bpp fields were incorrectly displayed.
2. Changed the C++ API for memory handling functions to template instead of legacy defines.
3. Simplified requirements for the .TIME file for loading 4D (Nifti,Midas, etc). Now only a few fields are required.
4. Fixed defect RoiStats4D when no ROI was present.
Build 473 is released.
1. Fixed the defect: when a single invalid multiframe file is present in the subfolder - the whole DICOM load failed without diagnostics. Now problematic file names are shown to the User who has an option to proceed without them.
2. Fixed defect in sorting calling contract in DICOM Tree record sorting (RawTime and RawTimeSerNumber).
3. Fixed several memory leaks in DicomMakeTree.cpp
4. DicomMakeTree.cpp : C++17 compliance: removed binary operators in parallel sorting.
Build 472 is released
1. Allowed a reasonable display of DICOMs when the SliceSpacing and Slice thickness = 1e60 (VOIDVOX)
2. Fixed bug in FVXDCM_GetPixelDataInfo function.
3. Fixed bug in FVXDCM_MinimizeDicomHeader function.
4. Fixed bug in FVXDCM_SaveSliceDirect function.
5. Fixed microseconds (UINT16) truncation bug.
6. Fixed DCM_PixelSpacing defect with switched Vx,Vy order.
7. FVXDCM DJ codecs clean-up is fixed.
Build 471 is released.
1. Implemented FlexDim design for the Unet 2.5D segmentation network.
2. Dicom dialog box: implemented 2 options for working with "Combined Studies", so they can be copied
3. Fixed logic errors in "Enumerate Tree Items with Checked Ancestors". This was causing the problem of duplicated files when copying the DICOM subtree.
4. Removed the "Multiframe warning" from DICOM Tree to Folders function.
FireVoxel Build 470 is released
1. Fixed long-standing error when after multilayer volume rotation often the message would come up between layer resolution mismatch.
2. Expanded and debugged the "FVX folder to Major orientation batch" GUI function.
3. Started the DUKE100H preparation workflow under a separate submenu,
4. FLEXR3D\MC: modified procedure how keypoints are constructed. This was to fix a situation of very thin images coming out with 0 keypoints.
5. Updated ABT file set
6. Batch function for FVX folder to Unify Times and Single Slice.
7. Fixed defect when in newer DICOMs the PixelSpacing information is located within nested Sequences. Same for SliceThickness.
8. Various corrections for IVIM model #17, related to the model-unsuitable voxels.
Build 469A is released.
1. FVX expiration date was changed.
2. WML batch processing: default algorithm changed to #2 everywhere.
3. First WML batch function was renamed to "NIFTI folder: WML batch processing".
3. Fixed the "DICOM folder: WML batch processing" so the function accpets {0,1,2} case subfolders per case (2 subfolders correspond to FLAIR+MPR)
3. Fixed the "FVX folder: WML batch processing" (failed due to a new QuickSave function)
Build 469 was released.
1. Implemented a batch function to take a folder of FVX files. Each containing a 4D volume and an ROI. Batch motion correction is done and all results are written to the Target folder.
2. Fixed 2D Raster Skeleton algorithm.
3. Fixed the rotation conventions in the XYZ rotation and the Orthogonal rotations.
4. Batch function to convert a folder of FVX files into a specified Major orientation.
5. Ongoing work for the Unet improvements: variable dimensions, categories, etc.
Build 468 is released.
1. Breast Unet 2.5D: adapted current augmentatiton to support the channel dimension
2. Implemented function to split a folder of NIFTI files into Left\Right images (support Breast Unet).
3. Release of AI integrated model for GRASP4D breast segmentation
4. Release of AI integrated model for VIBE4D breast segmentation
Build 467 is released.
1. Re-engineering of Model0 and Model1, calculations and dialog.
a) Changed Model#1 Start\Length hyperparameters.
b) Model#1 name changed to "AUC"
c) MaxVal output parameter moved to Model0.
d) Removed warning about change in model hyperparameters (due to software update).
2. ROI>Threshold by Signal interval: Now works on 4D volumes by returning the
mask for the entire 4D volume.
3. Initial implementation of the Breast 4D volume segmentation based on U-net.
Build 466B is released.
1. Dynamic Frameworks : application starts with the defaule NO_SIGNAL_CONVERSION method for
IF\Tissue conversions.
2. Dicom Tree -to- Folders: fixed the crash problem in case of the incorrect DICOM files having an identical SERIES UID for different patients.
3. Dicom Tree-to-Folders added the code to create extra long folder name when the Root folder is on the network.
4. DICOM De-iD function to a new Target Folder: creates a structure output (as opposed to a linear file structure before).
Build 466 is released.
1. AutoFocus4D dialog: fixed defect when the Mode2D variable was not initialized.
2. Signal Difference Registration measure (Autofocus 3D\4D\Moco): improved speed x5 due to using AVX2 operations.
3. ABT unit test for FDG motion correction
4. Fixed the cropping crash defect in VROI with multiple timepoints.
5. Dynamic Modelling dialog: "IFn Paste" button is grayed for models without IFn.
6. Dynamic Modelling dialog: removed non-functioning entries
7. Fixed various issues with Model0.
8. Extract max connected component 2D/3D: made them In-Place operation and enabled Undo\Redo
9 Rename current "Save FireVoxel Document" GUI function into "Save As FireVoxel Document". New "Save FireVoxel Document" function saves to the current document name without bringing up the dialog box.
Build 465 is released.
1. Dialog Raster Paintbrush: Extended the combo box field
2. Gauss RBF sparse-to-dense flow field : optimized speed by batching the parallel Y-loop. Runs x1.5 faster on a breast volume at 2mm grid.
3. FLEXR-3D registrattion: when the Source ROI is not present - now we simply align the center of Source and Target volumes as a prior (unless the DICOM tag transform not present).
4. RoiStats-4D dialog: changed the call, so the the ALL ROIS displlay option is now enabled.
5. x1.5 speed improvement in FLEXR3D when very dense regular grid in used.
Build 464 is released.
1. Spine Disc compression (Jacobian map) workflow documentation created.
2. Corrected the IPP (image position patient) after the 4D volume crop.
3. Implemented ABT subtest for the FLAIR SYNTH Training Reg\Norm.
4. Implemented Unet3D variant using the Pool\Unpool with indices (instead of customary MaxPool).
5. Implemented Volume>AdvanceTo>Timepoint of Max Signal
6. Allowed PET volumes to be of INT type too, so some workflows now enabled.
7. PET-FDG motion correction : changed default motion correction parameters.
8. LayerControl dialog: fixed the defect when the SelectedItem was outside the list window, then after
any operation it would jump to display the selected item, etc.
9. Implemented Radial Forward AutoFocus4D method, specifically to reduce jittering issues in FDG motion correction.
10. WorkFlow>Brain FDG-DCE: implemented an automatic Target ROI calculation. User typically
advances to about 1000 sec, Chooses 4D PET, Brain Atlas. Mask is automatically produced.
11. Layer Control dialog: made it more intuitive by splitting the Remove Active\Unmarked functions.
12. AutoFocus4D dialog: now displays the current Dynamic Index used as the Target of registration.
13. Combine WMSEED {X,Y,Z} GUI function into a single WMseed menu item.
14. Fixed bug when all 4D layers are removed, the current timepoint is still >0.
15. Fixed bug in WMseed and EdgeWave function when there are both 3D and 4D layers, current T>0 operation is called on 3D layer. Crash due to the incorrect timepoinyt.
16. Replaced URAL naming on GUI to "Normalized Gradient Field".
Build 463 is released.
1. Update the FLEXR3D dialog box.
2. Update FLEXR3D User documentation
3. Updated the Image Position Pattient calculation for Transform>Rotate Volume, Transform>Rotate Volume Orthogonal.
4. In ROI>Theshold to ROI: initial signal window now corresponds to the actual Min,Max voxels.
Build 462 is released.
1. Implemented SUV map calculation over PET volumes.
2. Major update to Dynamic Analysis> Save N-tuple file. With optional ROI and optional coordinates now. Proper handling of NAN entries.
3. FlEXR3D dialog: implemented option to output the Jacobian map of the deformation
4. Signal Difference measure in FLEXR registration: corrected numerical defect, optimized for x2 speed improvement, added the progress bar.
5. AutoFocus4D: fixed defect so that REAL images are allowed
Build 461B is released.
1. Transform>Mirror {X,Y,Z} functions: implemented DICOM position tag modification
2. 3 Projection view: corrected behavior for the correct display.
3. Fixed defect in PR_CopyFileArr function. This also fixed defect in DICOM Open dialog Copy File functionality.
4. Create CerebrAplus atlas the includes the {WM,GM,CSF} layer.
5, Modified Brain Atlas registration workflow to permit additional custom layers in the Atlas.
Build 461
1. Continued work on UNet3D for pancreas: replace the binary sigmoid DICE loss by the 2-class softmax DICE loss. That worked very well with binary threshold issue gone away.
2. First variant of "genetic shape crossover": augmentation technique of generating new pancreas shapes. Gained +2% DICE on NIH dataset.
3. Implemented Measure>ROI mass center distance.
4. Fixed N4 failure problem - including VS 2013 redistribution into FireVoxel now.
5. Pancreas AI work.
6. Very efficient separable convolution. Updated VolumeSmooth dialog to include "Separablem option". N3 was updated and old version eliminated.
7. Compilation with extra Security flags.
Build 459 is released.
1. Update to the "DICOM folder -> to a folder of NII files" GUI function.
2. Update to the "DICOM folder -> to a folder of FVX files" GUI function.
3. Fixed a memory leak in the LoadDicomRecord function.
4. Fixed the FireVoxel.key generation (multiple spaces problem)
5. Updated ChangeVolume Resolution function.
6. Fixed defect in DICOM>Convert DICOM folder to NIFTI.
7. Fixed error in PFRAME VA_GetNonVoidMask( PFRAME V )
8. Experimental implementation of Genetic Algorithm (GA) for optimizing the GOMR maps using TV-measure. Gained 2% on top of Laplacian smoothing.
9. Implemented Measure>Calculate Volume TV-2D
10. Implemented Dynamic Modelling > Output N-tuple parametric fille.
11. Removed Volume>Smooth across dynamic dimension. This was superseded by more advanced smoothing functions.
12. Fixed the DICOM folder > to FVX folder function.
13. Enabled loading NIFTI files when both Q- and S-forms are 0.
14. Workflows>Brain MRI : EdgeWave Express: collapsed 3 items {Axial,Sagittal,Coronal} into a single one with the automatic orientation check.
Build 458 is released.
1. When parsing the DICOM tree: we determine if the files were deidentified and in that case we add the PatientID to distinguish between different patient's records.
2. Corrected defect: New layer addition and paintbrush usage now set the DocumentModified flag. So there is a warning when the User tries to close the document.
3. FLEXR3D processing dialog: added an option to save FFF (flow field file).
4. MainMenu>Tranform: added an option to transform using FFF file.
5. FLEXR3D\FLEXRMC added warning when SSC measure is selected to ensure the feature keypoints are enabled.
6. Added UI Function>Test : Combine Probability Maps to Atlas.
7. Added UI Function>Test : Sharpen template using Atlas
8. FLEXR cross-correlation similarity measure: on large appertures (~16vox) obtained a 20% speed up by re-arranging the memory access during parallel execution.
9. FLEXR SSC measure calculation : removed a major memory leak.
10. Further optimization of Crosscorrelation measure (FLEXR): using the x86 superscalar instructions and 32-bit floating precision, achieve 32 threads X 16 superscalar operations = x512 parallelization.
11. Removed NGF (Normalize Gradient Field) similarity measure from FLEXR3D\FLEXRMC dialog options.
12. Enable the SSC similarity measure in FLEXR-MC dialog box.
13. Model 17 (IVIM segmented fit): substantial update with improved parameter ranges etc.
14. Model 18 (IVIM biexp fit): provided update for the ranges of fitted parameters.
15. Parametric modelling dialog: when model changes - the Output parameters selection gets all unchecked to avoid confusion.
16. Corrected behavior when the new layer is added and it has diferent spatial attributes. Now it ensures that everything matches to the base layer (resolution, slice position, orientation, etc).
17. Merged PWR.DLL and VolumeAnalyze.dll (VolumeAnalyze is removed from distribution now). This is done for linkage efficiency and removing redundancies.
Build 457 is released.
1. Open DICOM folder: fixed crash when the folder is empty. Provided diagnostic.
2. Fixed crash when multi-frame file is invalid. Provided diagnostic.
3. Corrected defect: when the ROI or other layer with different resolution from base is added, now ALL spatial information is properly copied to the new layer.
4. Fixed hard to find defect: when function FindLayerContainingName was called, the whole name of the layer including PATH was checked. Corrected: only the name title is checked, because the path contained the searched name (like Atlas)
5. Fixed defect when loading zip-compressed headers embedded in FVX files.
Build 450 is released.
1. DICOM Smoothing batch tool: performed correction for site#3 by folding STUDY UID.
2. Temporal Shape Means smoothing - implemented 2D option for a major acceleration.
3. Internal : Add Layer using Header Volume: fixed the crash defect when there was a mixture of 3D and 4D layers.
4. Neck Multimodality workflow: Updated the parameters for CT->GRASP FLEXR registration.
Build 449 is released.
1. >ROI>Threshold To ROI GUI function: parallelized and added a progress bar. It was slow on really big REAL images (300MB+).
2. Increased the REAL Image compression threshold: this is so the images are only compressed when it is worth more. This really speeds up the viewing.
3. Corrected the ParalleBatch {Length,NumberOfBatches} calculation function.
4. FLEXR3D\FLEXRMC dialogs : added an option to Inflate target ROI (similar to AutoFocus3D)
5. FELXR: Minimum Spanning Tree : added the progress bar.
6. Cross Correlation function : upgraded from AVX2 to AVX512
7. Implemented Hip registration workflow.
8. Fixed defect: Layer Control Dialog: SaveAll (fixed the orientation issue when saving to NIFTI volumes)
9. Fixed defects in API:VolSetSlice function.
10. Fixed defects in Temporal Shape Means function
11. DICOM Folders : Conventional Smoothing to Target DICOM Folder.
12. DICOM Folders : TSM Smoothing to Target DICOM Folder.
13. Remove Multipass from FLEXR dialogs.
Build 448 is released.
1. FLEXR: Introduce vicinity rotation invariance for similarity measures. Applied it to the X-correlation measure.
2. Brain Atlas GUI: implemented menu items for Stage1 and 2SW-Stage2 processing.
3. FLEXR: Removed OptiMap measure from Menu choices.
4. Re-implemented important IsRoiEmpty function so it works very fast and without decompression.
5. Removed all the items related to Ultra Sound processing.
6. Incorporated the IsRoiSliceEmpty fast check into zooming pipeline. It was x6 time faster for Mindboggle atlas with 70 ROIs. Also incroporated into FilmView for a similar speedup.
7. Regular Grid keypoint generation: corrected the adjacency checking to comply with keypoint positision in voxel corner (not vertex).
8. Complete rework of Roi Surface keypoints. Vertice correction and speed up.
9. Autofocus3D:CalculateMeasure: removed sub-code for SignalDifference using RL-encoding.
10. Corrected FLEXR ROI padding calculation to include all measures.
11. Removed FLEXR legacy algorithm
12. Corrected crash defect : in Affine Reslicing when the resulting volume exceeds 4GB.
13. FLEXR\Similarity: adjusted vicinity calculation in case single slice (2D) image.
Build 447 is released.
1. Re-implemented the dense Flow field generation, so it works correctly when the initial transform is general affine (as opposed to scale+translation)
2. FLEXR : implemented the VOID voxel concept in Target and Source images. Modified all registration metrics to work properly with VOID voxels. This is especially important for Atlas representation.
3. Atlas based registration : added the workflow item. Atlas is automatically split into the regions that appear as the individual layers.
4. Made corrections in Neck Multimodality workflow - Step 15.
Build 446 is released.
1. Minimum Spanning Tree algorithm update with keypoint re-arrangement in the order of the Tree width-first traverse.
2. FLEXR: developed a multipass version of this algorithm running on 1/3 of RAM. Multipass allows to start minimum spanning tree from several distant positions to compensate for tree approximation.
3. NW flow field generation: provided an AVX256 implementation for x2 speedup.
4. NW flow Sparse-to-Dense: implemented algorithm for filtering out remote keypoints for speedup. This was based on evaluating Y-Z exponents and introdducing some minor artefacts.
5. Volume-to-concentration conversion: fixed defect when VOID voxels were treated as regular ones calculating an infinite concentration as a result.
6. Completely re-engineered sparse-to-dense flow field generation for upto x20 speed up (on CT Lung 5 mm grid)
7. Workflow>Breaset MR BPE : implemented Whole Breast Segmentation function
8. File>DICOM>Dicom Tree to Folders : fixed defect when composite SERIES were not able to convert to folder.
9. VA_VolSegHist: fixed defect. This function was returning thresholds measured in Histogram bins. Corrected to signal.
10. Workflow>BPE breast : added a one-click function for FGT segmentation.
11. Workflow>BPE breast: added function for 3D motion correction.
12, MainMenu>Dynamic Analysis: enabled work without supplying the T1-map so only T1W conversion is enabled.
13. Simplified the FLEXR 3D/MC menues.
Build 445 is released.
1. VA_RAW_VolSaveFile function: optimized when CurrTinx!=1 only the required timepoint is decompressed.
2. New GUI function: Convert folder of FVX files into a target folder with separate subfolder for each FVX file. For each FVX subfolder save all layers to NII files.
3. Provided FLEXR RAM estimation function and comparison to the system resources.
4. Updated MR Lung segmentation algorithm
Build 444 is released.
1. FLEXR fixed defect so the registered volumes have the same Image Position\Orientation as the Target volume.
2. Updated the Machine GUID scrambling algorithm.
3. Neck multimodality workflow: added the DWI Body Segmentation and DWI->GRASP registration.
4. Improved the FLEXR masking algorithm, both Smask and Tmask.
5. FLEXR perform corrections is Target->Source output option.
6. Fixed defect in bool VA_VolOverRoi_AvgMinMax, that was affecting the Optimal Intensity Window.
7. FLEXR3D works now when the Source volume is 4D, so it would reslice all timepoints and produce a 4D layer.
8. Fixed defect in DisplayVoxelInfo (status line), so the VOID voxel location show the dynamic index too.
9. Provided a first version of Neck Multimodality 15 step workflow combining PET, CT, GRASp,DWI.
10. Compare documents\compare volumes : provided the comparison function which works on compressed image data, so there is no need to decompress for the comparison.
11. Huffman compression of DICOM headers: upgraded to 64-bit and corrected when the longest H-code exceeded 24-bit.
12. Updated the Machine GUID scrambling scheme.
Build 443 is released.
1. EdgeWave UI dialog box: fixed defect when Absolute Core SI was not accepting negative values (f.e. Real CT).
2. FLEXR3D dialog UI: added the Initial Transform option
3. FLEXR:InitialAlignment - substantial algorithm re-engineering.
4. Neck Multimodlaity Workflow: Added GUI function for the initial Ct to GRASP alignment.
5. FLEXR3D: implemented the FLEXR with Initial Transform file (vtf).
6. Expanded the FVX License key file to include Windows Machine GUID.
7. Corrected the WC\WL setting in Volume View Filter dialog.
Build 441 is released.
1. Volume Layer: ViewFilter dialog box (INT,REAL) : introduced new "Adaptive Window Level\Width option". It optimizes mapping to screen for every zoom. Very useful for comparing registration results on dark timepoints such as last b-values.
2. LayerControl dialog : implemented "Interlaced View" option {X,Y,XY} so the layers are seen in overlacing manner.
3. Volume>Split 4D volume into layers" : for 4D volumes splits each separate timepoint into a document layer. Useful for viewing motion correction results.
4. Upgraded to FVX file format v17 due to above (#1,2) changes.
Build 440 is released.
1. Internal: upgraded VolumePad function to work with 4D volumes.
2. Implemented prototype of NLM-D denoising (when TACs are compared for each location), as opposed to perform NLM for each timepoint separately.
3. When saving volumes with Void orientation to NIFTI, display a warning and save in default orientation.
4. Implemented new denoising algoritm: Temporal Shape Means (with GUI)
5. Implemented new denoising algoritm: Spatial Temporal Shape Means (with GUI).
6. Dynamic framework can now output the Model volume for every voxel (modified GUI by adding a check to the dialog box).
7. Numpy load COMPLEX64 support was added.
8. Fixed FLEXR3D crash on single slice volumes (regular grid generation).
9. Fixed crash in Gaussian smoothing function applied to ROI.
10. BPE map and report generation: changed to average Slope (from Start-End slope). Allowed function to work on any number of timepoints.
11, Added support for additional variety of SIEMENS b-value encoding in SEQUENCE_NAME tag.
Build 438 is released.
1. Fixed defect in AutoFocus3D registration : new registered layer now have orientation of the Target layer.
2. Developed first prototype of Multi-Protocol brain registration workflow (MRI 'Change Map"display project)
3. Developed Rigid and Elastic workflow for the MPRAGE longitudal brain change.
4. Developed Rigid workflow for the ADNI phantom longitudal comparison.
5. Upgraded Jacobian map calculation
a) To use central-difference calculations
b) To be able to work when Source and Target volumes have different resolution.
6. Implemented analytical calculation of the Jacobian maps for NW transform (during the elastic registration FLEXR).
7. ViewTac dialog : fixed defect when the entire curve has VOIDVOX values.
8. Internal: extended VA_VolGetBox\GetSlice functions to accept T=-1 (all timepoints)
9. Workflow: Segmentation\MotionCorrection item now outputs {Jacobian,DispY,DispDistance} mea1sures of the field.
10 NW transofrm was simplified by removing the cut-off conditions on the remote voxels.
11. Streamline code and optimized speed of EDTF calculation (part of FLEXR algorithm : regularization).
12. Optimized ROI Inflate\Deflate function (x4 speed up). This is used in UI and FLEXR.
13. FLEXR: x1.5 speed up of the X-correlation similarity measure values calculations.
14. Parallelized "IsInfiniteArray" function for testing infinite double values. Part of FLEXR:Regularization. x8 speed up on very large arrays (2Bill elements).
Build 437 is released.
1. Fixed major defect in Dynamic framework: for CT dynamic volumes, concentration conversion of Input Function was not performed.
2. Implemented GoMR for Model57 (Ktrans).
3. GO and GOMR algorithm improvements.
4. Flatline threshold mechanism implemented.
5. Fixed defect in batch module BM3 reporting the number of ROI working voxels.
Build 436 is released.
1. MainMenu>Measure>All Layers Irregularrity2D : modified to process all Documents and all Layers.
2. MainMenu>Measure : All Real Volume : Calculate mean over all ROIs: modified to process all Documents.
3. Implemented the ABT unit test for BM3 module.
4. Extended BM1 tool to work on multilayer folders of NIFTI images and ROIs.
Build 435 is released.
1. Fixed defect in BM3 module (crash or "no valid voxels" message)
2. View Projection dialog diasables the slab controls when slab type = NORMAL.
3. Detection of Multiframe DICOM files and suggesting to the User how to process them.
4. Parallelized detection of DICOM files to allow browsing through very large collections of files.
5. Implemented function to measure the cross-correlation (ZNCC) between 2 layers with the optional ROI.
Build 433 is released.
1. Integrated the DCMJP2K library from (DICOM OFFIS) for the Jpeg2000 support.
2. Fixed saving DICOM header for the extra large header (increased the buffer from
3. Fixed crash after multiple pressing of {NewROI3D,NewROI4D,Duplicate} in layer dialog box. This was due to intermingling of numerous Work and UI threads.
Publications using FireVoxel: May 2021 - August 2023
1. Quant Imaging Med Surg. 2023 Jul 1; 13(7): 4268–4283.
Published online 2023 May 9. doi: 10.21037/qims-22-1084
PMCID: PMC10347354
PMID: 37456319
Improvements of the Tada formula in estimating the intracerebral hemorrhage volume based on computed tomography
Zhuang Sha,# 1 , 2 , # Xinjie Zhang,# 1 , 2 , # Zhanying Li,# 1 , 2 , 3 , #
Jiancheng Feng, 1 , 2 Wei Quan, 1 , 2 Shiying Dong, 1 , 2 Mingqi Liu, 1 , 2 Weiwei Jiang
2. Brain-Penetrable Bi-specific Antibody Radioligands for in vivo PET Imaging of Tauopathy
Andrew Kelleher, Brandon Richardson, VINAY KUMAR BANKA, Alex Kazior, Cathy Tan, Sabrina Chan, Rumaish Khastgir, Hao Hu, Zakia Youss,
Mishkit Orin, Yan Lin, Dag Sehlin, Greta Hultqvist, Einar Sigurdsson, Stina Syvanen and Yu-Shin Ding
Journal of Nuclear Medicine June 2023, 64 (supplement 1) P271;
3. Histograms of Computed Tomography Values in Differential Diagnosis of Benign and Malignant Osteogenic Lesions
Heliyon
21 Pages Posted: 10 Aug 2023 Publication Status: Preprint
Ruiqing Wang
Qingdao University Ruizhi Zhou Qingdao University Shiqing Sun Qingdao University Zhitao YangQingdao University Haisong Chen
4. Magnetic Resonance
Published: 17 June 2021
Volumetric ADC histogram analysis for preoperative evaluation of LVSI status in stage I endometrioid adenocarcinoma
Xiaoliang Ma, Xiaojun Ren, Minhua Shen, Fenghua Ma, Xiaojun Chen, Guofu Zhang & Jinwei Qiang
European Radiology volume 32, pages460–469 (2022)Cite this article
5. European Journal of Radiology
Volume 140, July 2021, 109745
European Journal of Radiology
The role of volumetric ADC histogram analysis in preoperatively evaluating the tumour subtype and grade of endometrial cancer
Author links open overlay panelXiaoliang Ma a, Minhua Shen b, Yimeng He b, Fenghua Ma b, Jia Liu b, Guofu Zhang b, Jinwei Qiang a
https://doi.org/10.1016/j.ejrad.2021.109745
6. Magnetic Resonance Imaging
Volume 100, July 2023, Pages 93-101
Magnetic Resonance Imaging
Characterization of motion dependent magnetic field inhomogeneity for DWI in the kidneys
Nima Gilani a, Artem Mikheev a, Inge M. Brinkmann b, Dibash Basukala a, Thomas Benkert c, Malika Kumbella a, James S. Babb a, Hersh Chandarana a, Eric E. Sigmund a
https://doi.org/10.1016/j.mri.2023.03.008
7. MDPI
Evaluation of Whole-Tumor Texture Analysis Based on MRI Diffusion Kurtosis and Biparametric VI-RADS Model for Staging and Grading Bladder Cancer
by Xiaoyan Meng 1,Shichao Li 1,Kangwen He 1,Henglong Hu 2ORCID,Cui Feng 1ORCID,Zhen Li 1ORCID andYanchun Wang 1,*ORCID
Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
Author to whom correspondence should be addressed.
Bioengineering 2023, 10(7), 745; https://doi.org/10.3390/bioengineering10070745
Received: 18 May 2023 / Revised: 16 June 2023 / Accepted: 18 June 2023 / Published: 21 June 2023
8. Future Oncology. Vol 19
More accurate prediction of treatment response than mean apparent diffusion coefficient value in multiple myeloma using whole body MRI histogram analysis
Qingyan Qi‡, Huazheng Dong‡ , Xiaodong Ji‡, Kemin Zhang, Dehui Zou, Mu Hao, Shuhui Deng, Weiwei Sui, Zhiyi Song, Zhuo Yu, Zhiwei Shen, Wenyang Huang & Shuang Xia
Published Online:30 Jun 2023https://doi.org/10.2217/fon-2023-0205
9. Front. Oncol., 28 October 2022
Sec. Cancer Imaging and Image-directed Interventions
Volume 12 - 2022 | https://doi.org/10.3389/fonc.2022.957737
Study on the changes of CT texture parameters before and after HCC treatment in the efficacy evaluation and survival predication of patients with HCC
Wei Zhou1 Yinzhang Lv1* Xuemei Hu1 Yan Luo1 Jiali Li1 Haidan Zhu1 Yucheng Hai1,2
1Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
2Department of Radiology, Lanzhou University Second Hospital, Lanzhou, China
10. Magnetic Resonance Imaging
Volume 85, January 2022, Pages 262-270
Magnetic Resonance Imaging
Correlation between molecular prognostic factors and magnetic resonance imaging intravoxel incoherent motion histogram parameters in breast cancer
Wen Feng a b, Ya Gao b, Xing-Ru Lu b, Yong-Sheng Xu b, Zhuan-Zhuan Guo c, Jun-Qiang Lei b
https://doi.org/10.1016/j.mri.2021.10.027
11. Journal of Molecular Imaging > 2022 > 45(4): 480-485
Citation: WANG Hongrui, LI Jinling, ZHANG Qiang, ZHANG Keqin, ZHANG Hu. MRI apparent diffusion coefficient histogram and serum CA125 help to
evaluate the histopathological characteristics of endometrial adenocarcinoma[J]. Journal of Molecular Imaging, 2022, 45(4): 480-485. doi: 10.12122/j.issn.1674-4500.2022.04.04 shu
MRI apparent diffusion coefficient histogram and serum CA125 help to evaluate the histopathological characteristics of endometrial adenocarcinoma
doi: 10.12122/j.issn.1674-4500.2022.04.04
12. Kidney International Reports
Volume 8, Issue 5, May 2023, Pages 1057-1067
Kidney International Reports
Clinical Research
Quantitative Blood Oxygenation Level Dependent Magnetic Resonance Imaging for Estimating Intra-renal Oxygen Availability Demonstrates Kidneys Are Hypoxemic in Human CKD
Pottumarthi V. Prasad 1 3, Lu-Ping Li 1 3, Bradley Hack 1, Nondas Leloudas 1, Stuart M. Sprague 2 3
https://doi.org/10.1016/j.ekir.2023.02.1092
13.
Neurosurgical Review
Published: 02 September 2023
Whole-tumor histogram analysis of multi-parametric MRI for differentiating brain metastases histological subtypes in lung cancers: relationship with the Ki-67 proliferation index
Bin Zhang, Fengyu Zhou, Qing Zhou, Caiqiang Xue, Xiaoai Ke, Peng Zhang, Tao Han, Liangna Deng, Mengyuan Jing & Junlin Zhou
Neurosurgical Review volume 46, Article number: 218 (2023) Cite this article
14. Chinese Journal of CT and MRI
Relationship b e t w e e n I m a g e
Heterogeneity of Multiple Glioma and
Tumor Biological Behavior Based on
Multimodal MRI Combined with Histogram
GUAN Xiu-hong* .
Image Center of Dezhou Second People's Hospital, Dezhou 253000, Shandong Province, China
15. ALZHEIMER'S IMAGING CONSORTIUM
In vivo imaging of LC-NE Integrity: Mechanism for racial/ethnic disparity in preclinical AD
Yu-Shin Ding, Jiacheng Wang, Henry Rusinek, James Babb
First published: 31 December 2021 https://doi.org/10.1002/alz.050955
16. Cancer Imaging
Published: 12 June 2023
Ultra-high b-Value DWI in predicting progression risk of locally advanced rectal cancer: a comparative study with routine DWI
Guangwen Zhang, Ziliang Xu, Jianyong Zheng, Mian Wang, Jialiang Ren, Xiaocheng Wei, Yi huan & Jinsong Zhang
Cancer Imaging volume 23, Article number: 59 (2023) Cite this article
17. NeuroImage: Clinical
Volume 37, 2023, 103353
NeuroImage: Clinical
MRI histogram analysis of tumor-infiltrating CD8+ T cell levels in patients with glioblastoma
Caiqiang Xue a b c d 1, Qing Zhou a b c d 1, Peng Zhang e, Bin Zhang a b c d, Qiu Sun a b c d, Shenglin Li a b c d, Juan Deng a b c d, Xianwang Liu a b c d, Junlin Zhou a b c d
https://doi.org/10.1016/j.nicl.2023.103353
18. Academic Radiology
Volume 28, Supplement 1, November 2021, Pages S184-S191
Academic Radiology
Preliminary Study on Predicting Pathological Staging and Immunohistochemical Markers of Rectal Cancer Based on ADC Histogram Analysis
Author links open overlay panelKeke Zhang Master of Medicine a b c d, You Zheng Master of Medicine a b c d, Hongliang Huang Master of Medicine a b c d, Junqiang Lei PhD b c d
https://doi.org/10.1016/j.acra.2021.02.004
19. Cardiac Phase and Flow Compensation Effects on REnal Flow and Microstructure AnisotroPy MRI in Healthy Human Kidney
Eric E. Sigmund PhD, Artem Mikheev PhD, Inge M. Brinkmann PhD, Nima Gilani PhD, James S. Babb PhD, Dibash Basukala PhD, Thomas Benkert PhD, Jelle Veraart PhD, Hersh Chandarana MD
First published: 18 November 2022 https://doi.org/10.1002/jmri.28517Citations: 2
Contract grant sponsor: NIH (R01CA245671).
20. Differences in apparent diffusion coefficient histogram analysis according to EGFR mutation status in brain metastasis due to lung adenocarcinoma
Article type: Research Article
Authors: Bilgin, Ezel Yaltırıka; * | Ünal, Özkana | Göç, Muhammed Fatiha | Bahşi, Tahab
Affiliations: [a] Department of Radiology, Dr. Abdurrahman Yurtaslan Ankara Oncology Training and Research Hospital, Ankara, Turkey | [b] Department of Medical Genetics, Dr. Abdurrahman Yurtaslan Ankara Oncology Training and Research Hospital, Ankara, Turkey
DOI: 10.3233/XST-230084
Journal: Journal of X-Ray Science and Technology, vol. Pre-press, no. Pre-press, pp. 1-11, 2023
Received 19 April 2023 | 01 June 2023 | Accepted 19 June 2023 | Published: 06 July 2023
21. Alzheimer's & Dementia
BIOMARKERS
MRI longitudinal and cross-sectional monitoring of amyloid pathology in non-human primates
Thomas S. Genovese, Dina Ramadane, Charles Kingsley, Pramod N. Nehete, Akash G. Patel, Jonathan Leung, Miroslav Tibensky, Henry Rusinek, Stanton B. Gray … See all authors
First published: 01 February 2022 https://doi.org/10.1002/alz.055017
22. European Journal of Radiology
Volume 157, December 2022, 110587
European Journal of Radiology
Quantitative multiparametric MRI as a promising tool for the assessment of early response to neoadjuvant chemotherapy in bladder cancer
Xiao Yang a 1, Baorui Yuan a c 1, Yudong Zhang b 1, Juntao Zhuang a 1, Lingkai Cai a, Qikai Wu a, Qiang Cao a, Pengchao Li a, Qiang Lu a, Xueying Sun b
https://doi.org/10.1016/j.ejrad.2022.110587
23. The Neuroradiology Journal
Research article
First published online October 5, 2021
Differentiation of brain metastases originating from lung and breast cancers using apparent diffusion coefficient histogram analysis and the relation of histogram parameters with Ki-67
Mustafa Bozdağ https://orcid.org/0000-0002-0741-587X bozdagmustafa.84@gmail.com, Ali Er, and Sümeyye EkmekçiView all authors and affiliations
Volume 35, Issue 3
https://doi.org/10.1177/19714009211049082
24. Frontiers in Oncology
ORIGINAL RESEARCH article
Front. Oncol., 19 June 2023
Sec. Gynecological Oncology
Volume 13 - 2023 | https://doi.org/10.3389/fonc.2023.1206659
Whole-tumor histogram analysis of apparent diffusion coefficients for predicting lymphovascular space invasion in stage IB-IIA cervical cancer
Jin-mei Cheng1 Wei-xiao Luo1 Bang-guo Tan2 Jian Pan3 Hai-ying Zhou1* Tian-wu Chen1*
1Sichuan Key Laboratory of Medical Imaging, and Department of Radiology, Affiliated Hospital of North Sichuan Medical College, Nanchong, Sichuan, China
2Department of Radiology, Panzhihua Central Hospital, Panzhihua, Sichuan, China
3Department of General Practice, Taiping Town Central Health Center, Leshan, Sichuan, China
25. ORIGINAL RESEARCH article
Front. Oncol., 25 January 2023
Sec. Cancer Imaging and Image-directed Interventions
Volume 13 - 2023 | https://doi.org/10.3389/fonc.2023.1076400
Incremental prognostic value of ADC histogram analysis in patients with high-risk prostate cancer receiving adjuvant hormonal therapy after radical prostatectomy
Kangwen He1† Yucong Zhang2† Shichao Li1 Guanjie Yuan1 Ping Liang1 Qingpeng Zhang3 Qingguo Xie4 Peng Xiao4 Heng Li5* Xiaoyan Meng1* Zhen Li1
1Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
2Department of Geriatrics, Tongji Hospital of Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
3School of Data Science, City University of Hong Kong, Hong Kong, Hong Kong SAR, China
4College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
5Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
26. Glioblastoma Recurrence Versus Radiotherapy Injury
Combined Model of Diffusion Kurtosis Imaging and 11C-MET Using PET/MRI May Increase Accuracy of Differentiation
Dang, Haodan MD∗; Zhang, Jinming MD∗; Wang, Ruimin MD∗; Liu, Jiajin MS∗; Fu, Huaping MS∗; Lin, Mu PhD†; Xu, Baixuan MD∗
Clinical Nuclear Medicine 47(6):p e428-e436, June 2022. | DOI: 10.1097/RLU.0000000000004167
27. BMC Cancer
Published: 25 August 2022
The value of diffusion kurtosis imaging and intravoxel incoherent motion quantitative parameters in predicting synchronous distant metastasis of rectal cancer
Xue Ding, Danqi Sun, Qiuchen Guo, Yeting Li, Hao Chen, Xiaoxiao Dai, Guohua Fan, Yongyou Wu, Guangqiang Chen & Yonggang Li
BMC Cancer volume 22, Article number: 920 (2022) Cite this article
28. Clinical Radiology
Volume 78, Issue 7, July 2023, Pages 532-539
Differentiation of giant cell tumours of bone, primary aneurysmal bone cysts, and aneurysmal bone cysts secondary to giant cell tumour of bone: using whole-tumour CT texture analysis parameters as quantitative biomarkers
Author links open overlay panelJ.-Y. Wang a, D. Sun a, C.-Y. Liu a, B.-W. Hou a, Y.-T. Li a, S. Hu a, Y. Zhang a, J.N. Morelli b, X.-M. Li a
Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei Province, China
Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
Received 12 October 2022, Revised 15 February 2023, Accepted 6 March 2023, Available online 23 March 2023, Version of Record 29 May 2023.
29. J Hypertens. 2023 Jan; 41(1): 35–43.
Published online 2022 Oct 4. doi: 10.1097/HJH.0000000000003292
PMCID: PMC9794123
PMID: 36204999
Quadratic relationship between systolic blood pressure and white matter lesions in individuals with hypertension
Christopher Woldstad, a Henry Rusinek, b Elizabeth Sweeney, c Tracy Butler, a Yi Li, a Emily Tanzi, a Christopher Mardy, a Patrick Harvey, a Mony J. de Leon, a and Lidia Glodzik
30. Placenta
Volume 135, April 2023, Pages 16-24
Placenta
Placental perfusion using intravoxel incoherent motion MRI combined with Doppler findings in differentiating between very low birth weight infants and small for gestational age infants
Jing Deng a 1, Aining Zhang a 1, Meng Zhao a, Xin Zhou b, Xihu Mu a, Feifei Qu c, Jiacheng Song a, Ting Chen a
https://doi.org/10.1016/j.placenta.2023.02.005
31. Korean J Radiol. 2022 Jun; 23(6): 664–673.
Published online 2022 Apr 26. doi: 10.3348/kjr.2021.0627
PMCID: PMC9174502
PMID: 35555881
T2 Mapping with and without Fat-Suppression to Predict Treatment Response to Intravenous Glucocorticoid Therapy for Thyroid-Associated Ophthalmopathy
Linhan Zhai,1,2 Qiuxia Wang,1 Ping Liu,3 Ban Luo,4 Gang Yuan,5 and Jing Zhangcorresponding author1
32. Magnetic Resonance
Published: 27 May 2021
Dynamic contrast-enhanced MRI perfusion quantification in hepatocellular carcinoma: comparison of gadoxetate disodium and gadobenate dimeglumine
Daniel Stocker, Stefanie Hectors, Octavia Bane, Naik Vietti-Violi, Daniela Said, Paul Kennedy, Jordan Cuevas, Guilherme M. Cunha, Claude B. Sirlin, Kathryn J. Fowler, Sara Lewis & Bachir Taouli
European Radiology volume 31, pages9306–9315 (2021)
33. nature scientific reports
Published: 03 August 2022
Positron Emission Tomography reveals age-associated hypothalamic microglial activation in women
Tracy Butler, Lidia Glodzik, Xiuyuan Hugh Wang, Ke Xi, Yi Li, Hong Pan, Liangdong Zhou, Gloria Chia-Yi Chiang, Simon Morim, Nimmi Wickramasuriya, Emily Tanzi, Thomas Maloney, Patrick Harvey, Xiangling Mao, Qolamreza Ray Razlighi, Henry Rusinek, Dikoma C. Shungu, Mony de Leon, Craig S. Atwood & P. David Mozley
Scientific Reports volume 12, Article number: 13351 (2022) Cite this article
34. Ann Transl Med. 2021 Nov; 9(21): 1614.
doi: 10.21037/atm-21-2299
PMCID: PMC8640904
PMID: 34926658
Assessment of renal function using magnetic resonance quantitative histogram analysis based on spatial labeling with multiple inversion pulses
Ping Liang, 1 Shichao Li, 1 Chuou Xu, 1 Jiali Li, 1 Fangqin Tan, 1 Daoyu Hu, 1 Ihab Kamel, 2 and Zhen Licorresponding author 1
35. Quant Imaging Med Surg. 2021 Jun; 11(6): 2453–2464.
doi: 10.21037/qims-20-578
PMCID: PMC8107337
PMID: 34079715
Utility of noncontrast MRI in the detection and risk grading of gastrointestinal stromal tumor: a comparison with contrast-enhanced CT
Ziling Zhou,1,^ Jingyu Lu,1,^ John N. Morelli,2,^ Daoyu Hu,1,^ Zhen Li,1,^ Peng Xiao,3,^ Xuemei Hu,1,^ and Yaqi Shencorresponding author1,^
36. Front. Oncol., 13 October 2022
Sec. Cancer Imaging and Image-directed Interventions
Volume 12 - 2022 | https://doi.org/10.3389/fonc.2022.985735
Role of diffusion-weighted MRI in differentiation between benign and malignant anterior mediastinal masses
Tran Thi Mai Thuy1,2 Nguyen Truong Hoang Trang1,2 Tran Thanh Vy3,4 Vo Tan Duc1,2 Nguyen Hoang Nam1,2 Phan Cong Chien1 Le Huu Hanh Nhi5† Le Huu Nhat Minh6,7,8*†
37. 3D Printing for the Radiologist
2022, Pages 31-43
3D Printing for the Radiologist
Chapter 3 - Image Segmentation and Nonuniformity Correction Methods
Jingyun Chen PhD, Louisa Bokacheva PhD, Henry Rusinek PhD
38. Yuan, G., Qu, W., Li, S. et al.
Noninvasive assessment of renal function and fibrosis in CKD patients using histogram analysis based on diffusion kurtosis imaging.
Jpn J Radiol 41, 180–193 (2023). https://doi.org/10.1007/s11604-022-01346-2
39. Gynecologic Oncology
Volume 165, Issue 3, June 2022, Pages 594-602
Gynecologic Oncology
Volumetric apparent diffusion coefficient (ADC) histogram metrics as imaging biomarkers for pretreatment predicting response
to fertility-sparing treatment in patients with endometrial cancer
Xiaoliang Ma a 1, Xiaojun Ren b 1, Fenghua Ma c, Shulei Cai c, Chengcheng Ning b, Jia Liu c, Xiaojun Chen b, Guofu Zhang c, Jinwei Qiang a
https://doi.org/10.1016/j.ygyno.2022.04.008
40. Front. Pain Res., 11 May 2022
Sec. Abdominal and Pelvic Pain
Volume 3 - 2022 | https://doi.org/10.3389/fpain.2022.720141
This article is part of the Research Topic
Emerging Trends in Abdominal And Pelvic Pain
Menstrual Cycle Variation in MRI-Based Quantification of Intraluminal Gas in Women With and Without Dysmenorrhea
Hyeyoung Oh1 Eli D. Ehrenpreis2 Frank F. Tu1,3 Katlyn E. Dillane1 Ellen F. Garrison1 Nondas Leloudas4 Pottumarthi V. Prasad4,5 Kevin M. Hellman1,3*
41. Radiomics-Based Image Phenotyping of Kidney Apparent Diffusion Coefficient Maps: Preliminary Feasibility & Efficacy
by Lu-Ping Li 1,*,†,Alexander S. Leidner 2,†,Emily Wilt 1,Artem Mikheev 3,Henry Rusinek 3,Stuart M. Sprague 4,Orly F. Kohn 5,‡,Anand Srivastava 2,§ORCID andPottumarthi V. Prasad 1,§ORCID
J. Clin. Med. 2022, 11(7), 1972; https://doi.org/10.3390/jcm11071972
Received: 7 March 2022 / Revised: 25 March 2022 / Accepted: 29 March 2022 / Published: 1 April 2022
42. Pol J Radiol. 2021; 86: e298–e308.
Published online 2021 May 19. doi: 10.5114/pjr.2021.106427
PMCID: PMC8186307
PMID: 34136048
3D quantitative analysis of diffusion-weighted imaging for predicting the malignant potential of intraductal papillary mucinous neoplasms of the pancreas
Takao Igarashi,A,B,C,D,E,F Megumi Shiraishi,B Ken Watanabe,B Kazuyoshi Ohki,D Shinsuke Takenaga,E Hirokazu Ashida,E and Hiroya OjiriE
43. Choroid Plexus Calcification Correlates with Cortical Microglial Activation in Humans: A Multimodal PET, CT, MRI Study
T. Butler, X.H. Wang, G.C. Chiang, Y. Li, L. Zhou, K. Xi, N. Wickramasuriya, E. Tanzi, E. Spector, I. Ozsahin, X. Mao, Q.R. Razlighi, E.K. Fung, J.P. Dyke, T. Maloney, A. Gupta, A. Raj, D.C. Shungu, P.D. Mozley, H. Rusinek and L. Glodzik
American Journal of Neuroradiology June 2023, DOI: https://doi.org/10.3174/ajnr.A7903
44. MDPI:Cancers
Differences in the MRI Signature and ADC Values of Diffuse Midline Gliomas with H3 K27M Mutation Compared to Midline Glioblastomas
by Peter Raab 1,*ORCID,Rouzbeh Banan 2,Arash Akbarian 3,Majid Esmaeilzadeh 4,
Madjid Samii
5,Amir Samii 5,Helmut Bertalanffy 5,Ulrich Lehmann 6,Joachim K. Krauss 4ORCID,Heinrich Lanfermann 1ORCID,Christian Hartmann 6,† andRoland Brüning 7,†ORCID
Cancers 2022, 14(6), 1397; https://doi.org/10.3390/cancers14061397
Received: 31 December 2021 / Revised: 26 February 2022 / Accepted: 6 March 2022 / Published: 9 March 2022
45.
Computational and Mathematical Methods in Medicine.
Volume 2022 | Article ID 7746991 | https://doi.org/10.1155/2022/7746991
Show citation
MR Image Classification for Brain Tumor Texture Based on Pseudo-Label Learning and Optimized Feature Extraction
Qianqian Xu ,1Huachang Xu ,1Jie Liu ,1Mingxia Zhou,1Min Li,1Jinhui Xu,2and Hong Zhu
46. European Radiology Article
Magnetic Resonance
Published: 06 May 2023
Value of multiparametric magnetic resonance imaging for evaluating chronic kidney disease and renal fibrosis
Chenchen Hua, Lu Qiu, Leting Zhou, Yi Zhuang, Ting Cai, Bin Xu, Shaowei Hao, Xiangming Fang, Liang Wang & Haoxiang Jiang
European Radiology volume 33, pages5211–5221 (2023)Cite this article
47. Schizophrenia Research
Volume 247, September 2022, Pages 101-115
Schizophrenia Research
An integrative study of the microbiome gut-brain-axis and hippocampal inflammation in psychosis: Persistent effects from mode of birth
Peter Joe a, Jose C. Clemente b, Enrica Piras b, David S. Wallach b, Jessica Robinson-Papp c, Emeka Boka a, Brooke Remsen a b, Mharisi Bonner a, David Kimhy a, Deborah Goetz a, Kevin Hoffman d, Jakleen Lee b, Eugene Ruby e, Sarah Fendrich a f, Oded Gonen g, Dolores Malaspina a
https://doi.org/10.1016/j.schres.2021.09.019
48. Diagnostic and Interventional Imaging
Volume 102, Issue 5, May 2021, Pages 287-295
Diagnostic and Interventional Imaging
Neuroradiology
Texture analysis of apparent diffusion coefficient (ADC) map for glioma grading: Analysis of whole tumoral and peri-tumoral tissue
Radwa K. Soliman a, Abdelhakeem A. Essa b, Ahmed A.S. Elhakeem c, Sara A. Gamal a, Mohamed M.A. Zaitoun d
49. Ming Li, Xiaodan Xu, Kaijian Xia, Heng Jiang, Jianlong Jiang, Jinbing Sun, Zhihua Lu,
"Comparison of Diagnostic Performance between Perfusion-Related Intravoxel Incoherent Motion
DWI and Dynamic Contrast-Enhanced MRI in Rectal Cancer", Computational and Mathematical Methods
in Medicine, vol. 2021, Article ID 5095940, 7 pages, 2021. https://doi.org/10.1155/2021/5095940
50. Heliyon
Volume 9, Issue 5, May 2023, e16282
Journal home page for Heliyon
Research article
Prediction of prognostic factors in breast cancer: A noninvasive method utilizing histogram parameters derived from Adc maps
Özge Tanişman a, Fatma Tuba Kiziltepe b, Çiğdem Yildirim c, Zehra Sumru Coşar b
https://doi.org/10.1016/j.heliyon.2023.e16282
51. Abdominal Radiology Article
Hepatobiliary
Published: 20 August 2021
Whole tumor volumetric ADC analysis: relationships with histopathological differentiation of hepatocellular carcinoma
Ferhat Can Piskin, Huseyin Tugsan Balli, Kivilcim Eren Erdoğan, Sinan Sozutok & Kairgeldy Aikimbaev
Abdominal Radiology volume 46, pages5180–5189 (2021)Cite this article
52. Home European Archives of Oto-Rhino-Laryngology Article
Rhinology
Published: 22 June 2022
Texture analysis of conventional magnetic resonance imaging and diffusion-weighted imaging for distinguishing sinonasal non-Hodgkin’s lymphoma from squamous cell carcinoma
Guo-Yi Su, Jun Liu, Xiao-Quan Xu, Mei-Ping Lu, Min Yin & Fei-Yun Wu
European Archives of Oto-Rhino-Laryngology volume 279, pages5715–5720 (2022)Cite this article
53. Front. Oncol., 07 September 2021
Sec. Genitourinary Oncology
Volume 11 - 2021 | https://doi.org/10.3389/fonc.2021.702116
Clinical and Radiological Features of Urachal Carcinoma and Infection
Shichao Li Xiaoyan Meng Ping Liang Cui Feng Yaqi Shen Daoyu Hu Zhen Li*
54. Clinical Radiology
Volume 76, Issue 11, November 2021, Pages 846-853
Clinical Radiology
Whole-lesion histogram analysis of mono-exponential and bi-exponential diffusion-weighted imaging in differentiating lung cancer from benign pulmonary lesions using 3 T MRI
Author links open overlay panelQ. Zhu, C. Ren, J.-J. Xu, M.-J. Li, H.-S. Yuan, X.-H. Wang
55. Front. Immunol., 15 April 2021
Sec. Multiple Sclerosis and Neuroimmunology
Volume 12 - 2021 | https://doi.org/10.3389/fimmu.2021.670646
PD-L1 Improves Motor Function and Alleviates Neuropathic Pain in Male Mice After Spinal Cord Injury by Inhibiting MAPK Pathway
Fanqi Kong1† Kaiqiang Sun1† Jian Zhu1† Fudong Li1† Feng Lin1 Xiaofei Sun1 Xi Luo1 Changzhen Ren3 Lantao Lu1 ShuJie Zhao2 Jingchuan Sun1* Yuan Wang1* Jiangang Shi1*
56. Gerhalter, T., Cloos, M., Chen, A.M. et al.
T1 and T2 quantification using magnetic resonance fingerprinting in mild traumatic brain injury. Eur Radiol 32, 1308–1319 (2022).
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57. Chen Wang, Jing Yu, Ming Lu, Yang Li, Hongyuan Shi, Qing Xu,
Diagnostic Efficiency of Diffusion Sequences and a Clinical Nomogram for Detecting Lymph Node Metastases from Rectal Cancer,
Academic Radiology,
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58. X. He, J. Zhou, S. Ye, Q. Cheng, H. Miao, N. Xu, J. Li, Z. Pan, J. Cheng, M. Wang,
Differences in tumour heterogeneity based on dynamic contrast-enhanced MRI between tumour and peritumoural stroma for predicting Ki-67 status of invasive ductal carcinoma,
Clinical Radiology,
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59. Tim J. van Oostenbrugge, Ilse M. Spenkelink, Louisa Bokacheva, Henry Rusinek, Martin J. van Amerongen, Johan F. Langenhuijsen, Peter F.A. Mulders, Jurgen J. Fütterer,
Kidney tumor diffusion-weighted magnetic resonance imaging derived ADC histogram parameters combined with patient characteristics and tumor volume to discriminate oncocytoma from renal cell carcinoma,
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60. Oncology Letters
Diagnostic value of MRI radiomics in differentiating high‑grade glioma from low‑grade glioma: A meta‑analysis
Authors: Jiefang Wang Zhichao Chen Jieyun Chen
Published online on: August 23, 2023 https://doi.org/10.3892/ol.2023.14023
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63. Yitong Li, Yan Xiong, Bowen Hou, Chanyuan Liu, Jingyi Wang, John N. Morelli, Shuang Hu, Yao Zhang, Dong Sun, Xiaoming Li,
Detection of erosions and fat metaplasia of the sacroiliac joints in patients with suspected sacroiliitis using a chemical shift-encoded sequence (IDEAL-IQ),
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65. Research Article
Greater hypothalamic microglial activation with aging in women as
compared to men: potential relevance to sex and species differences in reproductive and biologic aging.
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66. Han, Q., Lu, Y., Wang, D. et al. Assessment of dynamic hepatic and renal imaging
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67. Front. Oncol., 01 December 2022
Sec. Cancer Imaging and Image-directed Interventions
Volume 12 - 2022 | https://doi.org/10.3389/fonc.2022.882584
Practical nomogram based on comprehensive CT texture analysis to preoperatively predict peritoneal occult metastasis of gastric cancer patients
Shuxiang Chen1* Huijuan Zhang1† Hong Wei2† Yongxiu Tong1 Xiaofang Chen1
68. Jing Lu, Hai Ming Li, Song Qi Cai, Shu Hui Zhao, Feng Hua Ma, Yong Ai Li, Xiao Liang Ma, Jin Wei Qiang,
Prediction of Platinum-based Chemotherapy Response in Advanced High-grade Serous Ovarian Cancer: ADC Histogram Analysis of Primary Tumors,
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Build 432 is released.
1. Model #19 (ADC): in case when only 2 timepoints are present, check that Y[0]>Y[1], otherwise set the voxel to VOIDVOX. Defect was negative ADC values.
2. Implemented an initial version of GoRe : technology to produce smooth parametric maps.
3. Moved Brain segmentation function from MainMenu>Segment to Workflows>BrainMR.
Build 430 is released.
1. Updated the model #18: "Basic IVIM".
2. Implemented IVIM model #54 based on the "Whole Solution Space" engine.
3. Model #53: Provided the conversion function from specified COD to RMSE so it is could be supplied as the SolEps to the Optimization (typical used COD value = 0.999)
4. Added the working resolution option for Radiomics2D : Individual\Batch processing.
TO ACTIVATE Radiomics2D for INT Maps:
1. Main Menu>Applications>Integer Map Batch Feature Analysis.
2. Dialog will appear to specify the folder (full of FVX files with several layers).
3. After short analysis a dialog box will appear which will show "various" for layer names.
4. At this point you can change the histogram binning common to all cases (fvx files).
5. Press "Features" to select the desire Radiomics features.
6. Note "Working Resolution (mm)" edit box. Leave default "0" to process layers at their current resolution.
OR Specify a different working resolution. All images will be converted to the specified Isotropic resolution (this would not be shown to the User explicitly).
FireVoxel Build 427 is released.
1. WML segmentation : Implemented batch job based on FVX files as a source.
2. Ground Truth evaluation batch on a set of FVX files.
3. New Algorithm (4) for WML segmentation based on WM\WML signal estimation.
4. WML segmentation : Fixed the crash when MPRAGE volume is used.
Build 424 is released
1. New optimization GOWSS engine is released that returns the entire solution space approximation.
2. Correction in EdgeWave "Mark Grow Start Voxels" function, removed the parallel_for construct.
3. New EdgeWave function : GrowROIintoConstraint.
4. Implemented a new variant of WML segmentation (Algo2).
Build 423 is released.
1. WML processing: WM layer added to output as a new layer (both single and batch variants).
2. WML algorithm: changed the way the LVinfl is used. Now the GM mask generated explicitly, then LVinfl is subtracted from GM.
3. Re-arrangement of the WML dialog box.
4. WML : added a function to remove the brain stem
Build 421 is released.
1. Fixed the crash when Saving FvX file, the dialog press Cancel button.
2. Fixed defect in EdgeWave algorithm, when running in 2D Mode. Defect was the empty mask because each slice was treated as 3D volume.
3. Implemented a prototype V1 of Heart Segmentation from CT.
4. Implemented custom DICOM scaling when loading the parametric maps generated by Siemens software.
5. Implemented File>Open Single DICOM File function.
Build 420 is released.
1. Developed a tool to select only specified b-values from the folder with DICOM files.
2. Fixed crash defect in Volume>Crop function.
3. Extended the BM1 tool (creating DWI documents) to load multiple layers of the parametric maps.
4. Developed function "Split muti-frame DICOM folder".
Build 419A is released.
1. BM1a tool (extract specified b-values from a folder of FVX files): fixed the defect and updated the UI.
2. Multiple Zones Concentric Objects (UI function) : simplified parameter dialog by removing the "Algorithm type". Now it is fixed to =3.
3. Removed the TPS option from the FLEXR 3D/MC transformation options.
