Implementing highly efficient internal volume codec that is targeting the volumes upsampled using the NN-interpolation. This is a critical function during the PET-4D to MR registration.
User optimally desires best available resolution for both registered volume, which is typically a MR resolution. However, for high timepoint # the resulting volumes might reach upto 7 GB (compressed with the regular FireVoxel compression).
This new codec will allow much higher compression of such registered PET volumes.
It is lossless.
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Sunday, April 20, 2014
High-accuracy PET-to-MR registration using an approximate BrainMask with 4X speed gain.
Presently, it is very hard to achieve PET-to-MR registration without additional guidance.
From previous registration experience, a quick Brain ROI was obtained using the BrainMask\EdgeWave tool.
This ROI is just an approximation of an anatomically precise mask of the brain. FireVoxel can obtained a much more precise BrainMask by adding the non-uniformity correction to that workflow.
After obtaining BrainMask ROI, the regular PET-to-MR registration runs that uses ROI as a guidance. Resulting registration has a very high accuracy.
The whole processing is less than 4 minutes on the reference ($1K) PC.
Presently, it is very hard to achieve PET-to-MR registration without additional guidance.From previous registration experience, a quick Brain ROI was obtained using the BrainMask\EdgeWave tool.
This ROI is just an approximation of an anatomically precise mask of the brain. FireVoxel can obtained a much more precise BrainMask by adding the non-uniformity correction to that workflow.
After obtaining BrainMask ROI, the regular PET-to-MR registration runs that uses ROI as a guidance. Resulting registration has a very high accuracy.
The whole processing is less than 4 minutes on the reference ($1K) PC.
Implemented an initial variant of the "Inter-volume Edge Constrained Smoothing". In this test:
a) MR and PET4D were registered with very high accuracy.
b) MR-edges (as 3D surfaces) were detected using the texture-edge detector (URAL)
c) PET-volume was smoothed, with smoothing apperture that was constrained by the presence
of edges within vicinity of every voxel.
This just a prototype as many options are available.
Specialized dialog box was developed.
a) MR and PET4D were registered with very high accuracy.
b) MR-edges (as 3D surfaces) were detected using the texture-edge detector (URAL)
c) PET-volume was smoothed, with smoothing apperture that was constrained by the presence
of edges within vicinity of every voxel.
This just a prototype as many options are available.
Specialized dialog box was developed.
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