Build 269A

1. Fixed the defect when not able to save a ROI to DICOM

FireVoxel Build 269 is released.


1.  Fixed defect in RoiStats3D dialog: when mouse cursor sliding over bin was displaying the
info for a different adjacent bin.

2.  Layer control dialog defect fix:  When User was unchecking non-Active layer, that layer became Disabled but Active.

3.  Fixed defect when  Volume was not loading with "SVD error" message.

4.  Texture Analysis Batch:  corrected the defect so that only Enabled volumes are analyzed.

5.  Fixed defect in  Volume>Convert Integer to Real.  Incorrect volume type was previously produced.

6.  Fixed normalization of the result when computing  Texture Gradient\Texture Edge maps.

7.  Enabled texture analysis batch for Real type volumes.

8. Added the "EMD\SigDiff" checkbox option for using different metrics for the gradient.

9.  Rename the "Texture Analysis Batch" dialog and menu item into "Region Heterogeneity Analysis Batch".

10.  Changed the Histogram calculation logic, so that the Range specified by the User kept as the Histogram range.  This applies both to RoiStats3D and Batch Dialog.

11. Fixed crash defect with Nbins=0, for {RoiStats3D, Heterogeneity Analysis Batch }

12. RoiStats3D : Made Histogram parameters preserved between the sessions of dialog.

FireVoxel Build 268 is released.


1. Implemented a workflow for Kidney Segmentation from Arterial Phase v.2.  Only requires a bounding rectangle of kidney on a single slice.












2. Finalized the Texture Analysis Batch workflow, with numerous new options:  Histogram Range,  Exclude Outside Range,  Voxel Weight Type.

3.  Implemented a stand-alone function for Texture Gradient Single Scale.  Replace radio buttons with ComboBox element.

4.  In Kidney Segmentation Workflow, the Kidney Patient side is automatically detected and the corresponding layer name is modified. 

FireVoxel  Kidney DCE segmentation workflow from a single Arterial Phase image:

FireVoxel  Build 267 is released.

1.  Texture Analysis dialog:  added parameters  Histogram {NumBin,RangeMin,RangeMax}

2.  Volume Projection settings:  implemented a new option "One Slice base only".  This is a regular projection but only the Base Layer is displayed.

3.  MainMenu>View>New View   :  corrected the defect so all the views are Re-tiled in this operation.

4.  Enabled the MultiView synchronized scroll.

5.  Output header at the top of the  Texture Analysis Log file.

Source folder = E:\000000_TestTexture

Texture radii (mm) = 0,2

Outer layer width (mm) = 3.000000

Inner layer width (mm) = 2.000000

Num inner layers       = 2

Hist num bins          = 100

Hist range min         = 0.000000

Hist range max         = 100000.000000

caseID modality ROI TxtrR[mm] vol[mm3] mean stdev skew kurt entr

Adamr_pre_T1_cr_sc T1 lesion 0.0 9607.181 253.207   57.520   -0.191   -0.645    4.149

FireVoxel Build 266 is released.


1.  Fixed defect in Applications>Brain MR>Automatic seed finder when the slice index was changed to a random value after the operation.

2.  Implemented a general operation for all models, so that the Input Function can have entirely different timing from the TAC data.  Integrated with model #32:  FDG 2 compartment Model

FDG 2CM data obtained as TAC (*.txt) from Jean

3. Fixed redundant sorting problem when constructing the DICOM tree (observed on Renal data)

4. Added and ABT unit subtest for the Model 32:  "FDG 2CM"

FireVoxel Build 265 is released.

1.  All EdgeWave-related processing was upgraded to seeds with double float coordinates.

2.  Changed the notion of a single slice VROI so the [Z0,Z1] coordinates are now [z,z+0.99....]

3.  Kidney Segmentation from Arterial Phase (KSFAP):  implemented a single click workflow with the dedicated dialog box.









4.  Produced an initial documentation "KSFAP QuickStart"

5.  Modified the "Save Stats"  file procedure in the RoiStats3D dialog box.

Implemented an Automatic  keypoint generator for the deformable registration based on the Texture Edge detector.  It provides results visually comparable to the Foerstner Keypoint detector, so it can become a viable alternative to Foerstner.
Advantage is that it is more studied and optimized in FireVoxel.  Eventually quality of the deformable registration would be compared for two or more keypoint algorithms.

Foerstner - Green squares, URAL texture is red dots.

   

Updated parameters for AutoMatic Kidney segmentation to improve segmentation results:

case Good1  Ctx+Mdl = Whole Kidney masks

Following parameters were changed:
In the first EdgeWave step , the Peel was reduced to 1 mm.



Also insured the Kidney is clipped 2nd time after the Whole Kidney mask is obtained








In the last step of (Bright Ridge Segmentation), the threshold parameter was reduced.

FireVoxel Build 264A is released.

1.  Implemented new options for  "User Options" dialog.
User can now specify RAM compression separately for {Integer,Real} volumes.  Configuration is saved and restored in the new FireVoxel sessions.

2.  Foerstner keypoints operator:  isolated the code and restored the correct operation

3.  Implemented ABT subtest for Foerstner Keypoints operation.








4.  when loading the  {.nii} files which only have values {0,1} the resulting volume type is binary.

5.  Fixed  defect when loading ROI as the new volume from RAW files {MIDAS,ANALYZE,NIFTI}
New behavior:
MIDAS:  if the ROI color tag is present - the initial forground color is set to specified tag value.

If tag was not present in MIDAS, or it is {NIFTI,ANALYZE} - the color is picked up from the ROI color generator, and would typically be one of the primary color  {Blue,red} and so on.

6.  Fixed defect:  When orthogonal projections are present, VROI is present, pressing F11 (=Advance to Next Landmark) on the orthogonal projection makes the image and vroi disappear.

7.  Fixed the defect when Synchronized cursor is enable and User constructs VROI and it disappeared for some volumes.

FireVoxel Build 264 is released.

1.  Implemented changes to the Main ToolBar, StatusBar and MainFrame window.  Removed the crash when attempting moving the ToolBar.  ToolBar can be now moved and re-dcoked repeatedly.

2.  Dynamic Modelling module:  performed the editing of all models for {Modality,DD}, modified
some models as specified.

3. Implemented the MCLASS_NONE modality concept.  This allows loading of RAW files  {Nifti,Midas} and then detecting a missing modality and requesting the Modality dialog.
UI Option "Verify RAW Modality" was changed so the dialog always comes up when modality is missing.

4. Fixed the error when saving the INTEGER (16-bit) volume to NIFTI (resulring image was all 0).

5. Fixed an issue when  loading the float32 NIFTI was crashing.  This was due to the presense
of invalid float32 (nand) representing the entire background.  So the new code converts all nand values to 0.

6. Fixed the defect with  "Realice_*.IMG"  Analyze volume.

7.  When loading the image without the modality, the document displayed prior to popping up the Modality dialog box, so User is more aware which modality to choose.  In 4D case, the volume automatically advances to the point of Max Info.

8.  Implemented "FDG Two Compartment model"  {K1,k2,k3,k4}

AIF (carotid artery)

ROI and its fitting.

FireVoxel 263A is released.

1.  4D Volume ->  Save .time:   replaced the RAW subtype selection dialog with the standard "DlgListChoice"

2.  Eliminated the redundant attribute "Concentration Required" from all dynamic models.

3.  Fixed the defect, when selecting the Tofts model (without prior loaded Input Functions) the "Load Input Function" (and other related IF buttons) dialog remained disabled.

4.  Changed convention:  when the Model not requiring Input Function is selected, the InputFunction panel buttons now becoming disabled.

5.  Enable modality CT inside the Toft's models (#8,#9)

FireVoxel Build 263 is released

1.  Re-enabled the EdgeWave Single Slice variant function.
2.  Implemented the ABT Subtest for EdgeWave Single Slice.
3.  Implemented generic "ListChoice" dialog box to use in many scenarios.
4.  Implemented  checkbox "User Option" - Verify Modality when loading RAW images.
     Dialog box with the selection of modalities appears during the RAW load.
5.  Fixed defects in DICOM management of the Dicom internal header structure for cleaner DICOM save.

FireVoxel 262C is released.

1.  Fixed the critical defect in Dynamic Experiment dialog box:  when the User was switching to Models with Input Functions, the module was not recognizing the switch and not updating the dialog
items properly.

Vocal cord dataset.  Pre-processed the volume with Multiscale texture gradient (Rad=3).
Applied StdDev map to both original and Gradient image.
Used timepoints  [25,406], to exclude the streak frames

StdDev for  a) Original image                                            b) Gradient Map

c) Edges

FireVoxel Build 262B

1. Fixed crash when processing texture gradient on the 1-slice volumes.
2. Multiscale Texture Gradient function now produces actual Real map instead of pseudo-Real
3.  Enabled Gradient calculation on 4D volumes applied to all timepoints.

FireVoxel 262A is released

1.  Re-engineered the MGH (FreeSurfer)  Read support.  Added the MGH\MGZ   ABT Unit test.
2.  Paintbrush drawing at Rad=0:  cursor radius is now minimal but will always remain visible.
3. Defect fix:  When Brush painting, after a certain stroke the Left Mouse (LMB) button is released.  Then if user continued the painting, but press the LMB first and only then  Ctrl button (usually it is Ctrl then LMB), FireVoxel was connecting the previously finished stroke with the newly started one, thus making the unexpected brush segments.

FireVoxel 262 is released.


1.  Fixed VolMinMax function to super-fast variant that does not require decompressing the volume and does not take any memory.  (defect fixed:  4GB CT was not loaded due to allocation restrictions).

2. Fixed the AboutDlg to display  "Allocated Memory" correctly when its size exceeds 2GB.

3. VolInfo dialog:  fixed the Frame Memory size information display when exceeds 2GB.

4.  Fixed defect: When older version of the FireVoxel (f.e. 255) tries to load new FVX file format introduced in later version (f.e.  261),  now exists gracefully instead of crashing.

5. Enabled the memory compression for Real images (PET, parametric maps etc).  On the large, 4GB,
mouse electrodes volume it is a x5 improvement comparing to Build 261.

6.  When saving the FVX document, check the appropriate disk space available and display the message if not enough space.

7.  Re-enabled parallel display when showing FilmView.  This makes big difference for very large volumes.

8. Fixed the CreatePaintbrush function so there is no increasing GDI handle leak during the extended drawing.

9.  When User starts to draw an ROI, without the ROI layer present,  a new ROI layer is created. But the Integer\Real layer still remains Active.  So MouseMove generates the access to the DisplayVoxelInfo, causing the decompress.  Now this access is disabled while painting, for much faster painting (x5 ? noticable on very large images)

10.  Re-enabled the Optimal Window Center\Width calculation for Real volumes to match the appearance in Build 255.

FireVoxel Build 261 is released.

Model 33 (Sokoloff):  Added the new output parameter :  Ki = K1*k3/(k2+k3);