Liver DCDI model defect: when voxelwise map (over the ROI) is requested calculation "hangs" and performance monitor shows only a single core loaded.
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Friday, April 11, 2014
Thursday, April 10, 2014
Wednesday, April 9, 2014
Sunday, April 6, 2014
Updated the IDIF user interface and algorithm:
a) Adding a drop down combo box where user can select the direction {X,Y,Z} of the Vessel.
b) Adding an experimental option {Auto} for the direction of the vessel. In this mode, all 3 directions will be checked and the largest (by voxel count) resulting vessel would be selected.
New features seem to provide a substantial improvement in usability and quality of the result. F.e. in liver, we would like to always work in Axial projection where the Portal Vein direction is often along {X,Y} axis.
So in new version, user does not have to choose the direction of the vessel. So for portal vein the "Auto" direction is set by default.
Another change is that the seed does not have to cover the vessel. Instead, it is only assumed that the center of the seed should be very close to the vessel in question.
a) Adding a drop down combo box where user can select the direction {X,Y,Z} of the Vessel.
b) Adding an experimental option {Auto} for the direction of the vessel. In this mode, all 3 directions will be checked and the largest (by voxel count) resulting vessel would be selected.
New features seem to provide a substantial improvement in usability and quality of the result. F.e. in liver, we would like to always work in Axial projection where the Portal Vein direction is often along {X,Y} axis.
So in new version, user does not have to choose the direction of the vessel. So for portal vein the "Auto" direction is set by default.Another change is that the seed does not have to cover the vessel. Instead, it is only assumed that the center of the seed should be very close to the vessel in question.
Saturday, April 5, 2014
Corrected defect: In all 3D registrations 2 documents should be present. The selected document is used as a Target of the registration. However, if more than 2 document are present, the selection of Source document is sometimes incorrect. Now the warning would be issued when more than one possible Source document is present.
Fixed the defect of gross misregistration in liver DCDI exam. New default setting for all parameters were explored and set. All the gross misregistration cases are fixed. Results are not stellar, but for large proportion of timepoint the movement across the axial plane is greatly reduce.
Further work will be done as needed but result is good enough for now.
Further work will be done as needed but result is good enough for now.
Friday, April 4, 2014
Developing UI function: " MainMenu>Volume>Crop timepoints". This function takes 4D volume.
User specify comma-deliniated set of timepoints such as "1,3,5,7". Function outputs another 4D volume containing only the specified timepoints. This is a very important function for troubleshooting the 4D registration.
User specify comma-deliniated set of timepoints such as "1,3,5,7". Function outputs another 4D volume containing only the specified timepoints. This is a very important function for troubleshooting the 4D registration.
Thursday, April 3, 2014
PET-to-MR registration: Achieved a very good registration result on the difficult case "MG". Problem was that PET image was rotated by 12 degrees with the respect to MR just in one axis Z.
Default registration parameters were "widened" to accommodate such enormous displacements. Also switch default registration measure from MI (mutual info) to URAL (gradients).
Default registration parameters were "widened" to accommodate such enormous displacements. Also switch default registration measure from MI (mutual info) to URAL (gradients).
Wednesday, April 2, 2014
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